Support Format
Can't wait to play with the addon using your own data? Here's a list of the formats currently supported.
| Format | EXT |
|---|---|
| DICOM | .dcm, .DCM, .DICOM, .ima, .IMA |
| BMP | .bmp, .BMP |
| JPEG | .jpg, .JPG, .jpeg, .JPEG |
| PNG | .png, .PNG |
| TIFF | .tif, .TIF, .tiff, .TIFF |
| Nifti | .nia, .nii, .nii.gz, .hdr, .img, .img.gz |
| Nrrd | .nrrd, .nhdr |
| HDF5 | .hdf, .h4, .hdf4, .he2, .h5, .hdf5, .he5 |
| OME | .ome.tiff, .ome.tif |
| MRC | .mrc, .mrc.gz, .map, .map.gz |
Despite my best efforts, I still can't achieve perfect support for all volumetric data formats, and I will continue to work on this.
Open Databases
If you don't have volumetric data, then you can download from some open databases.
Note that just because they are open and available for download does not mean you can use them for anything! Be sure to look at the description of the available scopes from website.
| Source | Object |
|---|---|
| MorphoSource | Open Research Data |
| Dryad | Open Research Data |
| Cell Image Library | Cells |
| OpenOrganelle | Cells |
| Allen Cell Explorer | Cells |
| EMDB | Protein, Viruses |
| IDC | Medical Images |
| Embodi3D | Medical Images |
| Github | Medical Images |
| NIHR | Medical Images |
| Medical Segmentation Decathlon | Medical Images |
| Visible Human Project | Medical Images |